PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DS_ECB844CBC.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 323aa    MW: 35837.3 Da    PI: 5.6005
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DS_ECB844CBC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.42.7e-18208298199
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            f+k +++s+v    +l lp +f+++h  k  +++ ++lede+g  ++ k+   + +++  l++GW++F+  +++k+gD+vvF+l+++ 
  Traes_3DS_ECB844CBC.1 208 FVKHMLHSHVVHGFWLGLPSDFCNKHLPK--KDTAVVLEDEDGHNYDAKY--LGAKQG--LSAGWRGFAINHDIKVGDVVVFQLVSSA 289
                            899********************999533..5679***************..888877..9**********************98766 PP

                            EE..EEEEE-S CS
                     B3  89 efelvvkvfrk 99 
                            +f   v ++r+
  Traes_3DS_ECB844CBC.1 290 KF--QVYILRA 298
                            66..9998886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-24202299IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-21202299IPR015300DNA-binding pseudobarrel domain
CDDcd100172.66E-26206297No hitNo description
PfamPF023621.6E-16208298IPR003340B3 DNA binding domain
SMARTSM010194.1E-19208299IPR003340B3 DNA binding domain
PROSITE profilePS5086313.465208299IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MALVHRRLAL LDSESXEEVP RPVNNSERDK MVMEKKMALV HRRLALLDSE SDKETDVVPT  60
ATMDDRLAIV VDQQPVVINC DDTDDKDEYV PLRIVRPRRA DSEQKRLFDV SQTHNAQDTD  120
TAKKKRGRLV NAKSDMEQKL NMSTPGLALV ESGGSNSSKS DVDDDLVPMQ VAAVNCQKTC  180
TSVQGNFGSA MERAEELLVE LPAEHPSFVK HMLHSHVVHG FWLGLPSDFC NKHLPKKDTA  240
VVLEDEDGHN YDAKYLGAKQ GLSAGWRGFA INHDIKVGDV VVFQLVSSAK FQVYILRANN  300
FTTTDGALGL LCLEAGKEKI PSE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-103HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754264.11e-145PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLW5DKJ50.0W5DKJ5_WHEAT; Uncharacterized protein
STRINGMLOC_25058.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-38B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]